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From DNA to a Designer and From Soup to Sioux City
 
The Panda's Thumb: More Reflections in Natural History (WW Norton & Co.: 1980), pp. 20-21.
Our textbooks like to illustrate evolution with examples of optimal design — nearly perfect mimicry of a dead leaf by a butterfly or of a poisonous species by a palatable relative. But ideal design is a lousy argument for evolution, for it mimics the postulated action of an omnipotent creator. Odd arrangements and funny solutions are the proof of evolution — paths that a sensible God would never tread but that a natural process, constrained by history, follows perforce.
"Address to the Pontifical Science Academy" (Libreria Editrice Vaticana: Oct 31, 2008).
To "evolve" literally means "to unroll a scroll", that is, to read a book. The imagery of nature as a book has its roots in Christianity and has been held dear by many scientists. Galileo saw nature as a book whose author is God in the same way that Scripture has God as its author. It is a book whose history, whose evolution, whose "writing" and meaning, we "read" according to the different approaches of the sciences, while all the time presupposing the foundational presence of the author who has wished to reveal himself therein. This image also helps us to understand that the world, far from originating out of chaos, resembles an ordered book; it is a cosmos. Notwithstanding elements of the irrational, chaotic and the destructive in the long processes of change in the cosmos, matter as such is "legible". It has an inbuilt "mathematics". The human mind therefore can engage not only in a "cosmography" studying measurable phenomena but also in a "cosmology" discerning the visible inner logic of the cosmos. We may not at first be able to see the harmony both of the whole and of the relations of the individual parts, or their relationship to the whole. Yet, there always remains a broad range of intelligible events, and the process is rational in that it reveals an order of evident correspondences and undeniable finalities: in the inorganic world, between microstructure and macrostructure; in the organic and animal world, between structure and function; and in the spiritual world, between knowledge of the truth and the aspiration to freedom. Experimental and philosophical inquiry gradually discovers these orders; it perceives them working to maintain themselves in being, defending themselves against imbalances, and overcoming obstacles. And thanks to the natural sciences we have greatly increased our understanding of the uniqueness of humanity’s place in the cosmos.
The Blind Watchmaker (New York: W.W. Norton, 1986), p. 316.
We cannot disprove beliefs like these, especially if it is assumed that God took care that his interventions always closely mimicked what would be expected from evolution by natural selection. All that we can say about such beliefs is, firstly, that they are superfluous and, secondly, that they assume the existence of the main thing we want to explain, namely organized complexity. The one thing that makes evolution such a neat theory is that it explains how organized complexity can arise out of primeval simplicity.
Darwin Was Wrong: A Study in Probabilities (New York: New Research Publications, Inc.), p. 81
To propose and argue that mutations even in tandem with 'natural selection' are the root-causes for 6,000,000 viable, enormously complex species, is to mock logic, deny the weight of evidence, and reject the fundamentals of mathematical probability.
"Philo to Cleanthes", in Dialogues Concerning Natural Religion (1779), Part XI.
Look round this universe. What an immense profusion of beings, animated and organised, sensible and active! You admire this prodigious variety and fecundity. But inspect a little more narrowly these living existences, the only beings worth regarding. How hostile and destructive to each other! How insufficient all of them for their own happiness! How contemptible or odious to the spectator! The whole presents nothing but the idea of a blind Nature, impregnated by a great vivifying principle, and pouring forth from her lap, without discernment or parental care, her maimed and abortive children!
The Origin of Species (Avenel Books, Crown Publishers, New York, 1979 [November, 1859]), p. 219.
If it could be demonstrated that any complex organ existed which could not possibly have been formed by numerous successive slight modifications, my theory would absolutely break down.